University of South Carolina
Biological Sciences Home Page
Polyana
A program to detect natural selection in protein-coding sequences by estimating
gene diversity at individual nucleotide sites.
Chaos Game
A program based on chaos game representation for analyzing phylogeny of viral sequences.
Supplementary
Material for article in Emerging Infectious Diseases (2010) : Reassortment of Ancient Neuraminidase
and Recent Hemagglutinin in Pandemic
(H1N1) 2009 Virus
SCR3
A program to estimate the synonymous and nonsynonymous differences by the Nei
and Gojobori method (1986) and conservative and radical amino acids differences
by Hughes et al. (1990) method.
Dblox
Dblox performs a non-overlapping window analysis in a genome to identify the
numbers of gene families shared between windows.
Paralogs_data.xls
Microsoft Excel table of recently diverged paralogous genes in human and mouse.
This is supplementary information for "Recent Mammalian Gene Duplications:
Robust Search for Functionally Divergent Gene Pairs", by Hughes and
Friedman.
Supplementary
Material for article in Applied Bioinformatics (2006):
Supplementary
Table S1.zip
Supplementary
Table S2.zip
Supplementary
Table S3.zip
Supplementary
Table S4.zip
Any suggestions or questions, contact Austin Hughes, at austin@biol.sc.edu