Dept. of Biological Sciences

James L. Pinckney

Associate Professor of Marine Science and Biological Sciences

Ph.D., 1992, University of South Carolina

Rm 506 CLS
803-777-7133
jpinckney@biol.sc.edu

Link to the Estuarine Ecology Lab

Marine ecology, Benthic microbial processes, Phytoplankton ecology

Estuarine and coastal studies form the core of research activities performed by Dr. Pinckney. General areas of interest include marine ecology, microbial ecology, microalgal ecophysiology, phytoplankton-nutrient interactions, harmful algal blooms, and ecosystem eutrophication in estuarine and coastal habitats of Texas. Specific interests are centered around the ecophysiological factors and processes that influence carbon partitioning, allocation (growth), and interspecific competition in multispecies assemblages. Most of Dr. Pinckney’s work over the past 20 years has emphasized investigations of the ecophysiology of benthic and phytoplanktonic communities and their contribution to ecosystem function. Analytical approaches involve manipulative field and laboratory experiments for examining the ecological physiology and responses of microalgal communities. Current research is being conducted in local estuarine, riverine, and intertidal habitats, as well as in pelagic systems in the Gulf of Mexico and hypersaline lagoons in the Bahamas.

 


Selected Publications:

Millie, D.F., G.R. Weckman, H.W. Paerl, J.L. Pinckney, B.J. Bendis, R.J. Pigg, G.L. Fahnenstiel. 2004. Neural net modeling of estuarine indicators: Hindcasting phytoplankton biomass and net ecosystem production in the Neuse (North Carolina) and Trout (Florida) Rivers, USA. Ecological Indicators (submitted 11/04).

69. See, J.H., L. Campbell, T.L. Richardson, J.L. Pinckney, R. Shen, N. Guinasso. 2005. Combining new technologies for determination of phytoplankton community structure in the Northern Gulf of Mexico. Journal of Phycology (in press).

68. Paerl, H.W., J. Dyble, J.L. Pinckney, L.M Valdes, D.F. Millie, P.H. Moisander, J.T. Morris, B. Bendis, M.F. Piehler. 2005. Using microalgal indicators to assess human and climatically induced ecological change in estuaries. p. 145-174. IN Bortone, S.A. (Ed.), Estuarine Indicators. CRC Press, Boca Raton, FL.

Pinckney, J. 2004. System-scale nutrient fluctuations in Galveston Bay, Texas (USA). Symposium on Functioning of Microphytobenthos in Estuaries. Royal Netherlands Academy of Arts and Sciences, Amsterdam. (submitted Aug 03)

  • 67. Richardson, T.L., J. Pinckney. 2004. Monitoring of the toxic dinoflagellate Karenia brevis using gyroxanthin-based detection methods. Applied Phycology 16:315-328.
  • 66. Örnólfsdóttir, E.B., S. Lumsden, J. Pinckney. 2004. Phytoplankton community growth-rate-response to nitrate pulses in a shallow turbid estuary, Galveston Bay, Texas. Journal of Plankton Research 26:325-339.

    65. Örnólfsdóttir, E.B., J. Pinckney, S. Lumsden. 2003. Nutrient pulsing as a regulator of phytoplankton abundance and community composition in Galveston Bay, Texas. Journal of Experimental Marine Biology and Ecology 303:197-220.

    64. Paerl, H.W., J. Dyble, P. Moisander, M. Piehler, J. Pinckney, & L. Valdes. 2003. Phytoplankton photopigments as indicators of estuarine and coastal eutrophication. Bioscience 53:953-964.

    63. Paerl, H.W., J. Dyble, P. Moisander, R. Noble, M. Piehler, J. Pinckney, T. Steppe, L. Twomey, L. Valdes. 2003. Microbial indicators of aquatic ecosystem change: Current applications to eutrophication studies. FEMS Microbiology Ecology 46:233-246.

    62. Hung, C-C., L. Guo, G. Schultz, J. Pinckney, & P. Santschi. 2003. Production and fluxes of carbohydrate species in the Gulf of Mexico. Global Biogeochemical Cycles. 17:1055, doi:10,1029/2002GB001988,2003.

    61. Santschi, P., C-C. Hung, L. Guo, J. Pinckney, G. Schultz, & I. Walsch. 2003. Control of acid polysaccharide production and 234Th/POC export flux by marine organisms. Geophysical Research Letters 30: 1044, doi:1029/2002GLO6046

    60. Pinckney, J.L., K.R. Carman, S.E. Lumsden, S.N. Hymel. 2003. Microalgal - meiofaunal trophic relationships in muddy, intertidal estuarine sediments. Aquatic Microbial Ecology 31:99-108.

    58. Steppe, T., J. Pinckney, J. Dyble, & H. Paerl. 2001. Diazotrophy in modern marine Bahamian stromatolites. Microbial Ecology 41:36-44.

    57. Burd, A., S. Lumsden, & J. Pinckney. 2003. The effects of measurement and model uncertainty in dilution bioassays. Aquatic Microbial Ecology (submitted Feb 04)

  • 55. Paerl, H.W., J. Dyble, L. Twomey, J. Pinckney, J. Nelson, & L. Kerkhof. 2002. Characterizing man-made and natural modifications of microbial biodiversity and activity in coastal ecosystems. Antonie von Leeuwenhoek International Journal of General and Molecular Microbiology 81:487-507.
  • 54. Piehler, M., J. Dyble, P. Moisander, J. Pinckney & H. Paerl. 2002. Effects of modified nutrient concentrations and ratios on the structure and function of the native phytoplankton community in the Neuse River estuary, North Carolina, USA. Aquatic Ecology 36:371-385.

    53. Örnólfsdóttir, E., J. Pinckney, & P. Tester. 2003. Quantification of the relative abundance of the toxic dinoflagellate, Karenia brevis, using photopigment biomarkers. Journal of Phycology. 39:449-457.

    52. Luettich, R., J. McNinch, H. Paerl, C. Peterson, J. Wells, C. Martens, M. Alperin & J. Pinckney. 2000. Neuse River Estuary Modeling and Monitoring Project Stage 1: Hydrography and circulation, water column nutrients and productivity, sedimentary processes and benthic-pelagic coupling, and benthic ecology. UNC Water Resources Research Institute Report No. 325-B, Raleigh, NC. 172 pgs.

    51. Pinckney, J., E. Örnólfsdóttir & S. Lumsden. 2002. Estuarine phytoplankton responses to sublethal concentrations of the agricultural herbicide, atrazine. Marine Pollution Bulletin 44:1109-1116

    49. Buzzelli, C., S. Powers, R. Luettich, J. McNinch, H. Paerl, C. Peterson, J. Pinckney. 2002. Estimating the spatial extent of bottom-water hypoxia and habitat degradation in a shallow estuary. Marine Ecology Progress Series 230:103-112.

    48. Bergmann, T., T. Richardson, H. Paerl, J. Pinckney & O. Schofield. 2002. Synergy between light and nutrients on the photosynthetic efficiency of phytoplankton populations from the Neuse River Estuary, North Carolina. Journal of Plankton Research 24:923-933.

    47. Pinckney, J., T. Richardson, D. Millie & H. Paerl. 2001. Application of photopigment biomarkers for quantifying microalgal community composition and in situ growth rates. Organic Geochemistry 32:585-595.

    46. Pinckney, J., H. Paerl, P. Tester & T. Richardson. 2001. The role of nutrient loading and eutrophication in estuarine ecology. Environmental Health Perspectives 109:699-706.

    45. Borsuk, M. C. Stow, R. Luettich, H. Paerl, J. Pinckney. 2001. Modelling oxygen dynamics in an intermittently stratified estuary: Estimation of process rates using field data. Estuarine, Coastal, and Shelf Science 52:33-49.

    44. Litaker, W., P. Tester, C. Duke, B. Kenney, J. Pinckney & J. Ramus. 2002. Seasonal niche strategy of the bloom forming dinoflagellate Heterocapsa triquetra. Marine Ecology Progress Series 232:45-62.

    43. Richardson, T., J. Pinckney & H. Paerl. 2001. Responses of estuarine phytoplankton communities to nitrogen form and mixing using microcosm bioassays. Estuaries 24:828-839.

    42. Reid, R.P., P. Visscher, A. Decho, J. Stolz, B. Bebout, I. Macintyre, C. Dupraz, J. Pinckney, H. Paerl, L. Prufert-Bebout, T. Steppe, & D. DesMarais. 2000. The role of microbes in accretion, lamination, and early lithification of modern marine stromatolites. Nature 406:989-992.

    41. Paerl, H., J. Pinckney, J. Fear & B. Peierls. 1999. Fish kills and bottom-water hypoxia in the Neuse River Estuary: Reply to Burkholder et al. Marine Ecology Progress Series 186:307-309.

    40. Paerl, H., J. Pinckney, J. Fear & B. Peierls. 1999. Ecosystem responses to internal and watershed organic matter loading: Consequences for hypoxia in the eutrophying Neuse River Estuary, North Carolina. Marine Ecology Progress Series 166:17-25.

    39. Paerl, H., J. Pinckney & T. Steppe. 2000. Cyanobacterial-bacterial consortia: Examining the functional unit of microbial survival and growth in extreme environments. Environmental Microbiology 2:11-26.


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